Breakthrough Systemic Embolism on Therapeutic Anticoagulation in Atrial Fibrillation: Warfarin vs. DOAC (Apixaban), Management, and Precautions
- Dr. Abdulwahab. A. Arrazaghi MD, FRCPC
- Aug 28
- 3 min read
By: Dr. Abdelwahab Arrazaghi, MD, FABIM, FRCPC

Abstract
Two patients with atrial fibrillation (AF) experienced systemic embolism despite guideline-concordant oral anticoagulation (OAC): (1) splenic infarction on therapeutic warfarin (INR >2) and (2) renal infarction on apixaban 5 mg twice daily. These rare but recognized “breakthrough” events occur with both vitamin K antagonists (VKAs) and direct oral anticoagulants (DOACs). This review compares failure rates of warfarin vs. DOACs, explores underlying mechanisms, outlines a practical evaluation, and provides evidence-based management strategies—including when to consider left atrial appendage occlusion (LAAO).
Case Vignettes
Case A (Warfarin): AF on warfarin with therapeutic INR >2 presented with acute left upper-quadrant pain; CT confirmed splenic infarction.
Case B (Apixaban): AF on apixaban 5 mg twice daily with appropriate dosing criteria presented with flank pain; CT confirmed renal infarction.
These cases highlight the residual risk of systemic embolism despite appropriate anticoagulation.
How Often Does Anticoagulation Fail?
Apixaban vs. warfarin (ARISTOTLE trial): stroke/systemic embolism (SE) occurred at 1.27%/year with apixaban vs. 1.60%/year with warfarin—with apixaban showing both efficacy and safety benefits.
Residual risk perspective: contemporary data suggest ~1–2%/year breakthrough ischemic events in anticoagulated AF patients, depending on baseline risk.
Warfarin: Outcomes strongly depend on time in therapeutic range (TTR). TTR <65% markedly increases stroke/SE, bleeding, and mortality; optimal control requires TTR ≥70–75%. A single therapeutic INR may mask poor historical control.
DOACs: Failures often relate to missed doses, drug interactions, underdosing, renal dysfunction, or extremes of body size.
Why Do Thromboembolic Events Occur on OAC?
Contributors include:
Suboptimal exposure
Warfarin: low TTR, vitamin K variability, drug interactions.
DOACs: missed doses; CYP3A4/P-gp inducers (e.g., rifampin, carbamazepine, phenytoin, St. John’s wort); renal impairment; extreme body weight; malabsorption.
Thrombus despite OAC
Left atrial appendage (LAA) thrombus occurs in ~2–4% of AF patients even on therapeutic OAC; higher risk with persistent AF, left atrial dilation, low LAA velocity, and heart failure.
Alternative embolic sources / prothrombotic states
Aortic/arterial plaque, endocarditis, malignancy, myeloproliferative disorders, paradoxical embolism, or antiphospholipid syndrome (APS).
DOACs are not recommended in high-risk APS; warfarin is preferred.
Practical Evaluation After Breakthrough Embolism
Step 1 — Confirm exposure & interactions
Verify adherence (pharmacy records, pill counts).
Review drug–drug/supplement interactions.
Reassess renal function, body weight, and correct DOAC dosing.
For warfarin: calculate TTR over prior 6–12 months.
Step 2 — Consider drug-level testing (selective use)
DOAC-specific anti–factor Xa assays may clarify exposure in special cases (malabsorption, extreme weight, renal failure).
Step 3 — Search for embolic substrate
Echocardiography (TEE/cardiac CT) for LAA thrombus, LA size, LV function, valves.
Vascular imaging (aorta, renal/splenic arteries).
Targeted hypercoagulable work-up if suspicion (APS, JAK2 mutation, occult malignancy).
Step 4 — Reassess stroke & bleeding risk
Update CHA₂DS₂-VASc and HAS-BLED scores.
Optimize modifiable risk factors (BP, sleep apnea, weight, alcohol, diabetes).
Condition-Specific Management
A) Splenic Infarction (on warfarin)
Supportive care: hydration, analgesia, infection management.
Continue anticoagulation unless bleeding/rupture.
Monitor for complications (abscess, rupture).
Vaccinate if functional asplenia suspected.
B) Renal Infarction (on apixaban)
Confirm with CT/CTA.
Continue anticoagulation; parenteral therapy optional if diagnostic uncertainty.
Endovascular therapy only in proximal occlusion, early presentation, or solitary kidney.
Monitor kidney function: AKI occurs in 20–40%, chronic impairment in ~⅓.
What to Change in Anticoagulation After a Breakthrough Event?
On warfarin:
If TTR <70%, switch to a DOAC or intensify warfarin management.
If TTR ≥70–75% but event occurs, consider switching to a DOAC (apixaban preferred).
On apixaban/DOAC:
Correct reversible contributors (adherence, interactions, renal dosing).
If exposure verified, consider switching class (e.g., to dabigatran) or to warfarin (INR 2–3).
Adding antiplatelet therapy is not recommended without another clear indication.
If LAA thrombus persists despite OAC:
Continue therapy and re-image.
If unresolved, multidisciplinary discussion for LAAO.
Left Atrial Appendage Occlusion (LAAO)
2023 ACC/AHA/ACCP/HRS AF Guideline:
Reasonable (Class 2a) if CHA₂DS₂-VASc ≥2 and contraindication to OAC.
May be reasonable (Class 2b) for recurrent embolism despite adequate OAC.
Key Precautions & Prevention Checklist
Confirm correct DOAC dosing (apixaban 5 mg bid unless ≥2 of: age ≥80, weight ≤60 kg, creatinine ≥1.5 mg/dL).
Eliminate drug interactions.
Ensure adherence (pillbox, reminders, pharmacy packs).
Monitor renal function at least annually.
Warfarin: maintain TTR ≥70%.
Cardiac imaging for LAA thrombus after breakthrough event.
Evaluate APS/other thrombophilias when appropriate.
Optimize AF and vascular risk factors.
Key Take-Home Points
Both warfarin and DOACs leave a residual 1–2%/yr risk of stroke/systemic embolism.
Breakthrough events require a structured evaluation: exposure, interactions, renal function, imaging, targeted labs.
Do not routinely add antiplatelet therapy to OAC in AF without another indication.
Switching agents or considering LAAO may be appropriate in selected patients.
References
Granger CB, et al. N Engl J Med. 2011 (ARISTOTLE trial).
Paciaroni M, et al. Int J Stroke. 2021.
StatPearls: Splenic Infarcts. Updated 2024.
StatPearls: Renal Infarction. Updated 2025.
2023 ACC/AHA/ACCP/HRS Guideline for AF. Circulation. 2023.
Gorczyca I, et al. JACC. 2021.
Ren JF, et al. World J Cardiol. 2018; Sci Rep. 2022.
Pengo V, et al. APS & anticoagulation guidance. ASH/ISTH/EULAR.